species:   Fugra
pid:       PID0938
parent:    FgmilR-7dps-109
paralog:   
locus:     NC_026477.1:7364270-7364380
matures:   ['UGUAGACAGUGAUUCUCUGGCCU', 'GCUAAAGCCCGCUGUUAUCUCC']
srr:       SRR6516243
genome:    /Users/jax/+Genomes/Fungal_genomes/Fugra.GCF_000240135.3_ASM24013v3_genomic.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Zeng2018-ds.SRR6516243.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Zeng2018-ds.SRR6516243.cram NC_026477.1:7364270-7364380

2 out of bounds
9 alignments
9 proper strand
3 stranded perfect matches

                             ****************        **************************                                
UGGCUAAAGCCCGCUGUUAUCUCCGCUGUACAGCACUUGUUCGGUACUAAGUCUCUGGAUAUGUGCCAUGAUCUUCAAUGCAAGCCUCUGUAGACAGUGAUUCUCUGGCCU
.(((((.((..(((((((..(...((((((((((((.(((((((..........))))))).))))..))........))).)))....)..)))))))...)).))))).
----------------------------------------------------------------------------------------UGUAGACAGUGAUUCUCUGGCCU l=23 a=0 c
--GCUAAAGCCCGCUGUUAUCUCC--------------------------------------------------------------------------------------- l=22 a=0 c*
-------------------------------------------------------UGGAUAUGUGCCAUGAUCUUCAAU-------------------------------- l=24 a=2 ma
-------------------------------AGCACUUGUUCGGU------------------------------------------------------------------ l=14 a=0 ma*

----------------------------------------------------------------------------------------UGUAGACAGUGAUUCUCUGGg-- l=21 a=3 
-------------------------------------------------------------------------------GCAAGCCUCUGUAGACAGUGAa---------- l=22 a=1 
--------------------------------------------------------------------------UCAAUGCAAGCCUCUGUAGACAG-------------- l=23 a=1 
-------------------------------------------------------UGGAUAUGUGCCAUGAUCUUCAAc-------------------------------- l=24 a=1 
-------------------------------------------------------UGGAUAUGUGCCAUGAUCUUCAAU-------------------------------- l=24 a=2 (ma)
-----------------------------------------------UAAGUCUCUGGAUAUGUGCCAa------------------------------------------ l=22 a=1 

mb-00010
ax-1001011
ku-01
ss-111111101000
fn-011
